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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs4074493 1 rs4075892 chr1:231171807 FAM89A chr1:231154704-231175995:- 0.52 4.6 2.55E-5 Carotid plaque burden (smoking interaction)
UVM cis rs9902453 1 rs4239227 chr17:28389103 EFCAB5 chr17:28256874-28435469:+ -0.4 -5.08 4.7E-6 Coffee consumption (cups per day)
UVM cis rs11190604 1 rs4244338 chr10:102272802 SEC31B chr10:102246403-102289636:- -0.39 -5.1 4.38E-6 Palmitoleic acid (16:1n-7) plasma levels
UVM cis rs2273 1 rs4282209 chr4:76919536 NAAA chr4:76831809-76862166:- -0.44 -4.99 6.33E-6 Longevity
UVM cis rs4294134 1 rs4294134 chr7:135293128 PL-5283 chr7:135347221-135378160:+ 0.69 5.84 2.88E-7 Paget's disease
UVM cis rs10935120 1 rs4309773 chr3:134277301 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10461617 1 rs43184 chr5:56141777 C5orf35 chr5:56205103-56213010:+ 0.93 6.12 1.05E-7 Type 2 diabetes
UVM cis rs9902453 1 rs4328498 chr17:28344276 EFCAB5 chr17:28256874-28435469:+ -0.4 -5.08 4.7E-6 Coffee consumption (cups per day)
UVM cis rs10935120 1 rs4334685 chr3:134304335 ANAPC13 chr3:134196547-134204865:- 0.45 6.73 1.03E-8 Height
UVM cis rs9902453 1 rs4350617 chr17:28423088 EFCAB5 chr17:28256874-28435469:+ 0.4 4.97 6.82E-6 Coffee consumption (cups per day)
UVM cis rs979233 1 rs4358532 chr5:42379957 C5orf51 chr5:41904470-41921737:+ -0.45 -5.41 1.41E-6 Systemic lupus erythematosus
UVM cis rs10935120 1 rs4367113 chr3:134287975 ANAPC13 chr3:134196547-134204865:- 0.45 6.73 1.03E-8 Height
UVM cis rs10935120 1 rs4368544 chr3:134300014 ANAPC13 chr3:134196547-134204865:- -0.45 -6.73 1.03E-8 Height
UVM cis rs4074493 1 rs4378192 chr1:231173379 FAM89A chr1:231154704-231175995:- 0.53 4.61 2.42E-5 Carotid plaque burden (smoking interaction)
UVM cis rs4395360 1 rs4395360 chr3:157318257 C3orf55 chr3:157261159-157319019:+ -0.4 -4.6 2.51E-5 Body mass index